If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 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'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 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=> 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 'cde', 'CDE12G0488' => 'cde', 'Cfa014906' => 'cfa', 'Cfa015629' => 'cfa', 'Cfa015630' => 'cfa', 'Cfa015631' => 'cfa', 'Cfa015633' => 'cfa', 'Cfa019203' => 'cfa', 'Cfa019755' => 'cfa', 'Cfa021522' => 'cfa', 'Cfa025221' => 'cfa', 'Cfa025232' => 'cfa', 'Ciclev10004473m.g' => 'ccl', 'Ciclev10004484m.g' => 'ccl', 'Ciclev10004511m.g' => 'ccl', 'Ciclev10006554m.g' => 'ccl', 'Ciclev10006614m.g' => 'ccl', 'Ciclev10006722m.g' => 'ccl', 'Ciclev10018950m.g' => 'ccl', 'Ciclev10019032m.g' => 'ccl', 'Ciclev10030749m.g' => 'ccl', 'CiPaw.01G256300' => 'cil', 'CiPaw.02G096400' => 'cil', 'CiPaw.02G096500' => 'cil', 'CiPaw.02G096700' => 'cil', 'CiPaw.02G096800' => 'cil', 'CiPaw.05G183000' => 'cil', 'CiPaw.11G021600' => 'cil', 'CiPaw.11G148200' => 'cil', 'CiPaw.12G030200' => 'cil', 'CiPaw.16G077200' => 'cil', 'ClCG01G003680' => 'cla', 'ClCG01G003690' => 'cla', 'ClCG06G006140' => 'cla', 'ClCG06G006150' => 'cla', 'ClCG06G006160' => 'cla', 'ClCG06G006180' => 'cla', 'ClCG06G017310' => 'cla', 'COL.COLO4_04692' => 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 'ama', 'MSTRG.9991' => 'ama', 'Nitab4.5_0000003g0720' => 'nta', 'Nitab4.5_0000007g0210' => 'nta', 'Nitab4.5_0000025g0290' => 'nta', 'Nitab4.5_0000043g0250' => 'nta', 'Nitab4.5_0000043g0260' => 'nta', 'Nitab4.5_0000559g0080' => 'nta', 'Nitab4.5_0000932g0040' => 'nta', 'Nitab4.5_0000932g0050' => 'nta', 'Nitab4.5_0000983g0060' => 'nta', 'Nitab4.5_0002358g0050' => 'nta', 'Nitab4.5_0002631g0030' => 'nta', 'Nitab4.5_0004153g0040' => 'nta', 'Nitab4.5_0006822g0040' => 'nta', 'Nitab4.5_0008971g0060' => 'nta', 'Nitab4.5_0011759g0010' => 'nta', 'Nn1g01132' => 'nnu', 'Nn3g16726' => 'nnu', 'Nn4g22631' => 'nnu', 'Nn4g26359' => 'nnu', 'Oeu016514.1' => 'oeu', 'Oeu027448.1' => 'oeu', 'Oeu029410.1' => 'oeu', 'Oeu033753.1' => 'oeu', 'Oeu034500.1' => 'oeu', 'Oeu034501.1' => 'oeu', 'Oeu034502.1' => 'oeu', 'Oeu036014.2' => 'oeu', 'Oeu036516.8' => 'oeu', 'Oeu050275.1' => 'oeu', 'Oeu050276.1' => 'oeu', 'Os02g0593100' => 'osa', 'Os04g0136200' => 'osa', 'Os04g0269600' => 'osa', 'Os04g0476100' => 'osa', 'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ), 'gf_id' => 'HOM05D000637', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000637' ), 'data_identifier' => 'HOM05D000637', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000637', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '890', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22600' => 'bna', 'A02p25750' => 'bna', 'A02p25770' => 'bna', 'A03p68090' => 'bna', 'A04p32250' => 'bna', 'A07p09380' => 'bna', 'A07p09390' => 'bna', 'A08p10450' => 'bna', 'A08p10460' => 'bna', 'Aa31LG1G24300' => 'aar', 'Aa31LG2G14400' => 'aar', 'Aa31LG2G340' => 'aar', 'Aa31LG9G10290' => 'aar', 'Aa31LG9G2380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1637' => 'aag', 'Actinidia02094' => 'ach', 'Actinidia08497' => 'ach', 'Actinidia14457' => 'ach', 'Actinidia14458' => 'ach', 'Actinidia14459' => 'ach', 'Actinidia14460' => 'ach', 'Actinidia15087' => 'ach', 'Actinidia19125' => 'ach', 'Actinidia24589' => 'ach', 'Actinidia24591' => 'ach', 'Actinidia25111' => 'ach', 'Actinidia27167' => 'ach', 'Actinidia27168' => 'ach', 'Actinidia27169' => 'ach', 'Actinidia36966' => 'ach', 'Actinidia36967' => 'ach', 'Actinidia37423' => 'ach', 'Actinidia40185' => 'ach', 'Ah.01g008090' => 'amhyb', 'Ah.02g117230' => 'amhyb', 'Ah.02g130210' => 'amhyb', 'Ah.13g073830' => 'amhyb', 'AL1G45770' => 'aly', 'AL4G41030' => 'aly', 'AL6G47120' => 'aly', 'AL7G40890' => 'aly', 'Aqoxy2G03374' => 'aox', 'Aqoxy2G03375' => 'aox', 'Aqoxy3G01200' => 'aox', 'Aqoxy7G00670' => 'aox', 'Aqoxy7G00671' => 'aox', 'Aqoxy7G00672' => 'aox', 'Aqoxy7G01580' => 'aox', 'arahy.Tifrunner.gnm1.ann1.16DI2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2WN1K3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3W965V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.640VZ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6EMH5F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76MJ1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87MSL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DR635' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8SQ1RZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A0H1CK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B39D2B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMWD5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV3LD5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9KEBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN8RBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TUB397' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2IP3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPN45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WS32QH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6CF9Y' => 'arhy', 'AT1G31670' => 'ath', 'AT1G31690' => 'ath', 'AT1G31710' => 'ath', 'AT1G62810' => 'ath', 'AT2G42490' => 'ath', 'AT3G43670' => 'ath', 'AT4G12270' => 'ath', 'AT4G12280' => 'ath', 'AT4G12290' => 'ath', 'AT4G14940' => 'ath', 'ATR0559G038' => 'atr', 'ATR0559G158' => 'atr', 'ATR0559G274' => 'atr', 'ATR0559G286' => 'atr', 'ATR0686G230' => 'atr', 'ATR0757G089' => 'atr', 'Atru.chr11.2111' => 'acertr', 'Atru.chr4.2482' => 'acertr', 'Atru.chr4.2483' => 'acertr', 'Atru.chr4.2491' => 'acertr', 'Atru.chr4.2587' => 'acertr', 'Atru.chr9.1421' => 'acertr', 'Atru.chr9.1425' => 'acertr', 'Atru.chr9.2558' => 'acertr', 'Atru.ctg752_3.109' => 'acertr', 'Atru.ctg752_3.94' => 'acertr', 'Atru.ctg752_3.98' => 'acertr', 'AUR62005455' => 'cqu', 'AUR62007449' => 'cqu', 'AUR62024020' => 'cqu', 'AUR62024289' => 'cqu', 'AUR62027285' => 'cqu', 'AUR62027289' => 'cqu', 'AUR62033611' => 'cqu', 'AUR62038612' => 'cqu', 'BcaB01g03450' => 'bca', 'BcaB04g18134' => 'bca', 'BcaB04g18136' => 'bca', 'BcaB05g23756' => 'bca', 'BcaB05g23759' => 'bca', 'BcaB06g26926' => 'bca', 'BcaB06g29250' => 'bca', 'BcaC01g01398' => 'bca', 'BcaC01g05282' => 'bca', 'BcaC01g05283' => 'bca', 'BcaC02g07236' => 'bca', 'BcaC02g08504' => 'bca', 'BcaC02g10415' => 'bca', 'BcaC03g16298' => 'bca', 'BcaC03g16299' => 'bca', 'BcaC06g31914' => 'bca', 'BcaC07g37742' => 'bca', 'BcaC07g37743' => 'bca', 'BcaC07g37744' => 'bca', 'BcaC09g50176' => 'bca', 'BcaNung00317' => 'bca', 'BcaNung05218' => 'bca', 'BolC1t02746H' => 'bol', 'BolC2t10114H' => 'bol', 'BolC2t10118H' => 'bol', 'BolC3t15192H' => 'bol', 'BolC3t21478H' => 'bol', 'BolC4t24447H' => 'bol', 'BolC4t26919H' => 'bol', 'BolC4t28475H' => 'bol', 'BolC7t41944H' => 'bol', 'BolC8t48123H' => 'bol', 'BolC8t48124H' => 'bol', 'BolC8t48125H' => 'bol', 'BraA01t02173Z' => 'bra', 'BraA01t02661Z' => 'bra', 'BraA02t07567Z' => 'bra', 'BraA03t11582Z' => 'bra', 'BraA04t18679Z' => 'bra', 'BraA07t28734Z' => 'bra', 'BraA08t33044Z' => 'bra', 'BraA08t33045Z' => 'bra', 'C01p28110' => 'bna', 'C02p41060' => 'bna', 'C02p41090' => 'bna', 'C02p41100' => 'bna', 'C03p91600' => 'bna', 'C04p29140' => 'bna', 'C04p69750' => 'bna', 'C07p14460' => 'bna', 'CAN.G1324.4' => 'can', 'CAN.G1324.5' => 'can', 'CAN.G1903.1' => 'can', 'CAN.G1903.2' => 'can', 'CAN.G1965.4' => 'can', 'CAN.G220.56' => 'can', 'CAN.G220.57' => 'can', 'CAN.G378.2' => 'can', 'CAN.G70.5' => 'can', 'CAN.G907.11' => 'can', 'CAN.G907.8' => 'can', 'CAN.G993.24' => 'can', 'CANSAT01G0069' => 'cansat', 'CANSAT21G1931' => 'cansat', 'CANSAT21G2071' => 'cansat', 'CANSAT80G1841' => 'cansat', 'CARHR049020' => 'chi', 'CARHR137560' => 'chi', 'CARHR151440' => 'chi', 'CARHR221550' => 'chi', 'CARHR253960' => 'chi', 'CARHR286920' => 'chi', 'CARHR286930' => 'chi', 'Carub.0001s3000' => 'cru', 'Carub.0001s3001' => 'cru', 'Carub.0002s0217' => 'cru', 'Carub.0004s2494' => 'cru', 'Carub.0006s3139' => 'cru', 'Carub.0006s3140' => 'cru', 'Carub.0007s2717' => 'cru', 'Ca_04574_v3' => 'car', 'Ca_10911_v3' => 'car', 'Ca_10912_v3' => 'car', 'Ca_16145_v3' => 'car', 'Ca_16287_v3' => 'car', 'Ca_21576_v3' => 'car', 'Ca_21580_v3' => 'car', 'Ca_22579_v3' => 'car', 'CBR_g48049' => 'cbr', 'CBR_g48050' => 'cbr', 'Cc00_g30450' => 'ccan', 'Cc03_g03630' => 'ccan', 'Cc03_g03650' => 'ccan', 'Cc03_g03660' => 'ccan', 'Cc03_g03670' => 'ccan', 'Cc04_g11740' => 'ccan', 'Cc08_g13160' => 'ccan', 'Cc08_g13170' => 'ccan', 'Cc11_g15620' => 'ccan', 'Cc11_g15630' => 'ccan', 'CDE06G1353' => 'cde', 'CDE08G0108' => 'cde', 'CDE11G0508' => 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=> 'col', 'COL.COLO4_05312' => 'col', 'COL.COLO4_05574' => 'col', 'COL.COLO4_23885' => 'col', 'COL.COLO4_23886' => 'col', 'COL.COLO4_24070' => 'col', 'COL.COLO4_24254' => 'col', 'COL.COLO4_38064' => 'col', 'COL.COLO4_38071' => 'col', 'COL.COLO4_38073' => 'col', 'COL.COLO4_38078' => 'col', 'COL.COLO4_38079' => 'col', 'Cpa.g.sc110.9' => 'cpa', 'Cpa.g.sc1695.1' => 'cpa', 'Cpa.g.sc29.98' => 'cpa', 'Cpa.g.sc29.99' => 'cpa', 'Cpa.g.sc33.11' => 'cpa', 'Cpa.g.sc33.12' => 'cpa', 'Cpa.g.sc58.119' => 'cpa', 'Cpa.g.sc58.120' => 'cpa', 'Cpa.g.sc58.121' => 'cpa', 'Cre01.g000650' => 'cre', 'Cre09.g402515' => 'cre', 'Cre13.g572750' => 'cre', 'CsaV3_1G001170' => 'csa', 'CsaV3_5G003790' => 'csa', 'CsaV3_5G003800' => 'csa', 'CsaV3_6G038130' => 'csa', 'CsaV3_6G038140' => 'csa', 'CsaV3_6G038150' => 'csa', 'CsaV3_7G022600' => 'csa', 'CSS0004880' => 'camsi', 'CSS0008065' => 'camsi', 'CSS0010272' => 'camsi', 'CSS0012639' => 'camsi', 'CSS0021907' => 'camsi', 'CSS0026868' => 'camsi', 'CSS0032830' => 'camsi', 'CSS0035163' => 'camsi', 'CSS0042729' => 'camsi', 'CSS0044749' => 'camsi', 'CSS0046426' => 'camsi', 'CSS0047236' => 'camsi', 'DCAR_000853' => 'dca', 'DCAR_006805' => 'dca', 'DCAR_021581' => 'dca', 'DCAR_021582' => 'dca', 'DCAR_026170' => 'dca', 'DCAR_026516' => 'dca', 'DCAR_027209' => 'dca', 'Dinv13984' => 'din', 'Dinv13986' => 'din', 'Dinv13988' => 'din', 'Dinv20606' => 'din', 'Dinv21576' => 'din', 'Dinv24797' => 'din', 'Dinv24798' => 'din', 'Dinv38544' => 'din', 'Dinv39086' => 'din', 'Dinv39087' => 'din', 'Dinv44519' => 'din', 'Dinv44521' => 'din', 'Dinv44524' => 'din', 'Dinv44525' => 'din', 'Dinv44527' => 'din', 'Duzib084G0338' => 'dzi', 'Duzib151G0085' => 'dzi', 'Duzib151G0824' => 'dzi', 'Duzib205G1632' => 'dzi', 'Duzib212G0513' => 'dzi', 'Duzib212G0631' => 'dzi', 'Duzib251G0758' => 'dzi', 'Duzib268G0225' => 'dzi', 'ECA232G2180' => 'eca', 'ECA233G0083' => 'eca', 'ECA234G2685' => 'eca', 'ECA240G3228' => 'eca', 'ECA240G3662' => 'eca', 'ECA246G4082' => 'eca', 'EL10Ac3g06429' => 'bvu', 'EL10Ac5g10669' => 'bvu', 'EL10Ac5g11916' => 'bvu', 'EL10Ac5g11917' => 'bvu', 'EL10Ac5g11918' => 'bvu', 'EL10Ac5g12974' => 'bvu', 'EL10Ac5g12976' => 'bvu', 'EL10Ac5g12981' => 'bvu', 'EL10Ac5g12982' => 'bvu', 'EL10Ac6g13800' => 'bvu', 'Eucgr.B03297' => 'egr', 'Eucgr.D01995' => 'egr', 'Eucgr.D01996' => 'egr', 'Eucgr.H03520' => 'egr', 'Eucgr.H03521' => 'egr', 'Eucgr.H03523' => 'egr', 'Eucgr.H03524' => 'egr', 'Eucgr.H03525' => 'egr', 'Eucgr.H03526' => 'egr', 'Eucgr.H03527' => 'egr', 'FAN04G1459' => 'fan', 'FAN04G1615' => 'fan', 'FAN04G2083' => 'fan', 'FAN07G0125' => 'fan', 'FAN07G0185' => 'fan', 'FAN07G1206' => 'fan', 'FAN07G2558' => 'fan', 'FAN08G1178' => 'fan', 'FAN08G1366' => 'fan', 'FAN08G2356' => 'fan', 'FAN08G2938' => 'fan', 'FAN12G0201' => 'fan', 'FAN12G0375' => 'fan', 'FAN12G1090' => 'fan', 'FAN12G3141' => 'fan', 'FAN13G1365' => 'fan', 'FAN15G0376' => 'fan', 'FAN17G0768' => 'fan', 'FAN18G0560' => 'fan', 'FAN18G0731' => 'fan', 'FAN18G2074' => 'fan', 'FAN18G3369' => 'fan', 'FAN22G1103' => 'fan', 'FAN22G1885' => 'fan', 'FAN22G2120' => 'fan', 'FAN24G1001' => 'fan', 'FAN24G2267' => 'fan', 'FAN27G1915' => 'fan', 'FvH4_2g01360' => 'fve', 'FvH4_2g30510' => 'fve', 'FvH4_4g15340' => 'fve', 'FvH4_4g15350' => 'fve', 'FvH4_4g15360' => 'fve', 'FvH4_4g15380' => 'fve', 'FvH4_4g15390' => 'fve', 'FvH4_4g15400' => 'fve', 'FvH4_4g25490' => 'fve', 'FvH4_5g00610' => 'fve', 'FvH4_5g06090' => 'fve', 'Glyma.01G062400' => 'gma', 'Glyma.02G038500' => 'gma', 'Glyma.02G120600' => 'gma', 'Glyma.06G178400' => 'gma', 'Glyma.07G255002' => 'gma', 'Glyma.08G282800' => 'gma', 'Glyma.10G090600' => 'gma', 'Glyma.10G248700' => 'gma', 'Glyma.15G276400' => 'gma', 'Glyma.17G019300' => 'gma', 'Glyma.17G085500' => 'gma', 'Glyma.18G143600' => 'gma', 'Glyma.20G145100' => 'gma', 'Glyma.20G145200' => 'gma', 'Glyma.20G145300' => 'gma', 'Glyma.20G145400' => 'gma', 'Gohir.A01G159451' => 'ghi', 'Gohir.A02G031500' => 'ghi', 'Gohir.A03G012101' => 'ghi', 'Gohir.A03G056800' => 'ghi', 'Gohir.A08G173400' => 'ghi', 'Gohir.A09G215100' => 'ghi', 'Gohir.A12G144700' => 'ghi', 'Gohir.D01G089950' => 'ghi', 'Gohir.D01G150800' => 'ghi', 'Gohir.D02G038200' => 'ghi', 'Gohir.D03G109700' => 'ghi', 'Gohir.D03G157766' => 'ghi', 'Gohir.D07G058800' => 'ghi', 'Gohir.D08G192100' => 'ghi', 'Gohir.D09G217600' => 'ghi', 'Gohir.D12G149300' => 'ghi', 'Gorai.002G186900' => 'gra', 'Gorai.003G116000' => 'gra', 'Gorai.003G165900' => 'gra', 'Gorai.003G166000' => 'gra', 'Gorai.003G166200' => 'gra', 'Gorai.004G202100' => 'gra', 'Gorai.004G213000' => 'gra', 'Gorai.005G042100' => 'gra', 'Gorai.006G051500' => 'gra', 'Gorai.006G238300' => 'gra', 'Gorai.008G160800' => 'gra', 'GSVIVG01004079001' => 'vvi', 'GSVIVG01005410001' => 'vvi', 'GSVIVG01017952001' => 'vvi', 'GSVIVG01017954001' => 'vvi', 'GSVIVG01017958001' => 'vvi', 'GSVIVG01017959001' => 'vvi', 'GSVIVG01019873001' => 'vvi', 'GSVIVG01038230001' => 'vvi', 'HanXRQChr05g0142921' => 'han', 'HanXRQChr06g0169311' => 'han', 'HanXRQChr11g0336571' => 'han', 'HanXRQChr11g0336581' => 'han', 'HanXRQChr11g0348381' => 'han', 'HanXRQChr13g0417281' => 'han', 'HanXRQChr13g0417301' => 'han', 'HanXRQChr13g0417311' => 'han', 'HanXRQChr16g0504671' => 'han', 'HanXRQChr16g0511781' => 'han', 'HanXRQChr17g0548101' => 'han', 'HanXRQChr17g0569971' => 'han', 'Haze_00911' => 'cav', 'Haze_00913' => 'cav', 'Haze_07570' => 'cav', 'Haze_08606' => 'cav', 'Haze_12242' => 'cav', 'Hma1.2p1_0156F.1_g068905' => 'hma', 'Hma1.2p1_0223F.1_g094070' => 'hma', 'Hma1.2p1_0511F.1_g168860' => 'hma', 'Hma1.2p1_0745F.1_g211920' => 'hma', 'Hma1.2p1_0745F.1_g211930' => 'hma', 'Hma1.2p1_0745F.1_g211940' => 'hma', 'Hma1.2p1_1076F.1_g254610' => 'hma', 'Hma1.2p1_1290F.1_g273480' => 'hma', 'Hma1.2p1_1619F.1_g293960' => 'hma', 'Hma1.2p1_3431F.1_g336020' => 'hma', 'HPP92_002071' => 'vpl', 'HPP92_002072' => 'vpl', 'HPP92_002086' => 'vpl', 'HPP92_002087' => 'vpl', 'HPP92_002090' => 'vpl', 'HPP92_002091' => 'vpl', 'HPP92_002092' => 'vpl', 'HPP92_006284' => 'vpl', 'HPP92_007537' => 'vpl', 'HPP92_015594' => 'vpl', 'HPP92_015595' => 'vpl', 'HPP92_015596' => 'vpl', 'HPP92_015597' => 'vpl', 'HPP92_015606' => 'vpl', 'HPP92_020931' => 'vpl', 'HPP92_020932' => 'vpl', 'HPP92_020975' => 'vpl', 'HPP92_023354' => 'vpl', 'Hund06024' => 'sun', 'Hund14637' => 'sun', 'Hund25386' => 'sun', 'Lalb_Chr05g0228361' => 'lal', 'Lalb_Chr08g0236691' => 'lal', 'Lalb_Chr12g0196291' => 'lal', 'Lalb_Chr12g0201861' => 'lal', 'Lalb_Chr13g0297661' => 'lal', 'Lalb_Chr16g0381951' => 'lal', 'Lalb_Chr17g0337241' => 'lal', 'Lalb_Chr23g0275531' => 'lal', 'Lj1g0005306' => 'lja', 'Lj2A209T49' => 'lonja', 'Lj2C209T0' => 'lonja', 'Lj2C209T1' => 'lonja', 'Lj2g0015481' => 'lja', 'Lj3A733G41' => 'lonja', 'Lj3A738T70' => 'lonja', 'Lj3A738T71' => 'lonja', 'Lj3A738T75' => 'lonja', 'Lj3A993G38' => 'lonja', 'Lj3A994T53' => 'lonja', 'Lj3C738G2' => 'lonja', 'Lj3C738G7' => 'lonja', 'Lj4g0019859' => 'lja', 'Lj4g0026053' => 'lja', 'Lj5A129T71' => 'lonja', 'Lj5g0012698' => 'lja', 'Lj5g0017246' => 'lja', 'Lj5g0018417' => 'lja', 'Lj5g0028221' => 'lja', 'Lj9C444G4' => 'lonja', 'Lsat_1_v5_gn_1_8240' => 'lsa', 'Lsat_1_v5_gn_1_85281' => 'lsa', 'Lsat_1_v5_gn_4_4420' => 'lsa', 'Lsat_1_v5_gn_4_77061' => 'lsa', 'Lsat_1_v5_gn_5_14121' => 'lsa', 'Lsat_1_v5_gn_6_89561' => 'lsa', 'Lsat_1_v5_gn_6_90041' => 'lsa', 'Lsat_1_v5_gn_7_76621' => 'lsa', 'Lsat_1_v5_gn_8_102720' => 'lsa', 'Lsat_1_v5_gn_9_22300' => 'lsa', 'Manes.01G074100' => 'mes', 'Manes.02G034000' => 'mes', 'Manes.03G179700' => 'mes', 'Manes.03G179800' => 'mes', 'Manes.06G109200' => 'mes', 'Manes.12G023700' => 'mes', 'Manes.14G061500' => 'mes', 'Manes.15G028100' => 'mes', 'Manes.15G028200' => 'mes', 'Mapoly0002s0179' => 'mpo', 'Mapoly0257s0001' => 'mpo', 'Mapoly0257s0003' => 'mpo', 'MBI01_g45397_MAGBIO' => 'mbi', 'MBI01_g47743_MAGBIO' => 'mbi', 'MBI01_g47744_MAGBIO' => 'mbi', 'MBI04_g44164_MAGBIO' => 'mbi', 'MBI04_g44992_MAGBIO' => 'mbi', 'MCO11G537' => 'mco', 'MD02G1257400' => 'mdo', 'MD06G1075400' => 'mdo', 'MD06G1075500' => 'mdo', 'MD06G1166900' => 'mdo', 'MD13G1102300' => 'mdo', 'MD13G1191800' => 'mdo', 'MD14G1172500' => 'mdo', 'MD16G1191900' => 'mdo', 'MD16G1192100' => 'mdo', 'MD16G1192300' => 'mdo', 'MD16G1192400' => 'mdo', 'MD16G1192500' => 'mdo', 'Medtr1g104550' => 'mtr', 'Medtr1g104590' => 'mtr', 'Medtr3g077080' => 'mtr', 'Medtr3g080500' => 'mtr', 'Medtr4g045887' => 'mtr', 'Medtr4g098910' => 'mtr', 'Medtr4g117610' => 'mtr', 'Medtr4g117660' => 'mtr', 'Medtr4g117670' => 'mtr', 'Medtr5g033170' => 'mtr', 'Medtr8g069505' => 'mtr', 'MELO3C005577.2' => 'cme', 'MELO3C005578.2' => 'cme', 'MELO3C014478.2' => 'cme', 'MELO3C014479.2' => 'cme', 'MELO3C014480.2' => 'cme', 'MELO3C026264.2' => 'cme', 'Migut.A00829' => 'egut', 'Migut.G00315' => 'egut', 'Migut.G00330' => 'egut', 'Migut.L00923' => 'egut', 'Migut.L00924' => 'egut', 'Migut.O00144' => 'egut', 'Migut.O00615' => 'egut', 'MSTRG.12065' => 'ama', 'MSTRG.12066' => 'ama', 'MSTRG.23160' => 'ama', 'MSTRG.25545' => 'ama', 'MSTRG.4025' => 'ama', 'MSTRG.4352' => 'ama', 'MSTRG.9741' => 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'Os06g0338200' => 'osa', 'Os06g0338700' => 'osa', 'Os07g0572050' => 'osa', 'Os07g0572100' => 'osa', 'Peaxi162Scf00002g00001' => 'pax', 'Peaxi162Scf00002g00017' => 'pax', 'Peaxi162Scf00092g00131' => 'pax', 'Peaxi162Scf00092g01415' => 'pax', 'Peaxi162Scf00092g01416' => 'pax', 'Peaxi162Scf00128g00137' => 'pax', 'Peaxi162Scf00255g00085' => 'pax', 'Peaxi162Scf00763g00428' => 'pax', 'PGR004G0816' => 'pgr', 'PGR031G2139' => 'pgr', 'PGR031G2882' => 'pgr', 'PGR055G0001' => 'pgr', 'PGR083G2165' => 'pgr', 'PGR102G0898' => 'pgr', 'PGR142G1870' => 'pgr', 'PGSC0003DMG400003936' => 'stu', 'PGSC0003DMG400013432' => 'stu', 'PGSC0003DMG400017157' => 'stu', 'PGSC0003DMG400017203' => 'stu', 'PGSC0003DMG400019077' => 'stu', 'PGSC0003DMG400023173' => 'stu', 'PGSC0003DMG400026988' => 'stu', 'PGSC0003DMG400030082' => 'stu', 'PGSC0003DMG400031836' => 'stu', 'PGSC0003DMG400041133' => 'stu', 'Phvul.002G150400' => 'pvu', 'Phvul.003G040401' => 'pvu', 'Phvul.003G040402' => 'pvu', 'Phvul.003G064200' => 'pvu', 'Phvul.003G106200' => 'pvu', 'Phvul.003G204032' => 'pvu', 'Phvul.005G023500' => 'pvu', 'Phvul.005G023600' => 'pvu', 'Phvul.007G056200' => 'pvu', 'Phvul.007G056400' => 'pvu', 'Phvul.007G056500' => 'pvu', 'Phvul.007G056600' => 'pvu', 'Phvul.009G174800' => 'pvu', 'Potri.001G118200' => 'ptr', 'Potri.001G118300' => 'ptr', 'Potri.008G151900' => 'ptr', 'Potri.010G045600' => 'ptr', 'Potri.010G088800' => 'ptr', 'Potri.010G088900' => 'ptr', 'Potri.010G089050' => 'ptr', 'Potri.012G084400' => 'ptr', 'Potri.015G082900' => 'ptr', 'Pp3c14_14330' => 'ppa', 'Pp3c17_5710' => 'ppa', 'Pp3c17_5720' => 'ppa', 'Pp3c20_1900' => 'ppa', 'Pp3c20_5880' => 'ppa', 'Pp3c24_15320' => 'ppa', 'Pp3c8_15180' => 'ppa', 'PRCOL_00002561' => 'pco', 'Prupe.1G011900' => 'ppe', 'Prupe.1G012000' => 'ppe', 'Prupe.1G012100' => 'ppe', 'Prupe.1G243500' => 'ppe', 'Prupe.5G078700' => 'ppe', 'Prupe.5G078900' => 'ppe', 'Prupe.5G166700' => 'ppe', 'Prupe.5G166800' => 'ppe', 'Psat2g080640' => 'psa', 'Psat4g032400' => 'psa', 'Psat4g032520' => 'psa', 'Psat4g115880' => 'psa', 'Psat5g111360' => 'psa', 'Psat5g116000' => 'psa', 'Psat6g207200' => 'psa', 'Psat6g207960' => 'psa', 'Psat6g208480' => 'psa', 'PSO017G5236' => 'pso', 'PSO063G4136' => 'pso', 'PSO111G0064' => 'pso', 'PSO210G6842' => 'pso', 'PSO210G7129' => 'pso', 'PSO455G0265' => 'pso', 'PSO478G0297' => 'pso', 'PSO478G0437' => 'pso', 'PSO478G2045' => 'pso', 'PSO478G2860' => 'pso', 'PSO528G0192' => 'pso', 'PSO781G0308' => 'pso', 'PSO782G0453' => 'pso', 'PSO782G1117' => 'pso', 'PSO782G3940' => 'pso', 'PSO832G4083' => 'pso', 'QL03p058374' => 'qlo', 'QL04p071328' => 'qlo', 'QL06p002681' => 'qlo', 'QL06p002694' => 'qlo', 'QL06p002705' => 'qlo', 'QL06p002760' => 'qlo', 'QL06p002776' => 'qlo', 'QL06p002822' => 'qlo', 'QL06p002849' => 'qlo', 'QL06p002922' => 'qlo', 'QL10p007190' => 'qlo', 'QL10p007221' => 'qlo', 'QL10p030824' => 'qlo', 'QL10p030854' => 'qlo', 'QL10p030988' => 'qlo', 'QL10p031023' => 'qlo', 'QL12p014851' => 'qlo', 'RcHm_v2.0_Chr4g0416411' => 'rch', 'RcHm_v2.0_Chr4g0416421' => 'rch', 'RcHm_v2.0_Chr4g0416431' => 'rch', 'RcHm_v2.0_Chr4g0416451' => 'rch', 'RcHm_v2.0_Chr4g0416461' => 'rch', 'RcHm_v2.0_Chr4g0416501' => 'rch', 'RcHm_v2.0_Chr4g0432831' => 'rch', 'RcHm_v2.0_Chr4g0432841' => 'rch', 'RcHm_v2.0_Chr5g0045861' => 'rch', 'RcHm_v2.0_Chr5g0045871' => 'rch', 'RcHm_v2.0_Chr7g0192721' => 'rch', 'RcHm_v2.0_Chr7g0201651' => 'rch', 'RcHm_v2.0_Chr7g0201661' => 'rch', 'Rhsim02G0023200' => 'rsi', 'Rhsim04G0085600' => 'rsi', 'Rhsim06G0094200' => 'rsi', 'Rhsim06G0108900' => 'rsi', 'Rhsim06G0109000' => 'rsi', 'Rhsim12G0111800' => 'rsi', 'Rhsim12G0167300' => 'rsi', 'Sabra01G0090900' => 'sbr', 'Sabra01G0091000' => 'sbr', 'Sabra08G0115700' => 'sbr', 'Sabra10G0022800' => 'sbr', 'Sabra10G0054200' => 'sbr', 'Sabra10G0054300' => 'sbr', 'Sabra12G0060700' => 'sbr', 'Sabra15G0106400' => 'sbr', 'SalBow2G0917' => 'sbo', 'SalBow2G1356' => 'sbo', 'SalBow2G3512' => 'sbo', 'SalBow5G0048' => 'sbo', 'SalBow6G0161' => 'sbo', 'SalBow6G0400' => 'sbo', 'SalBow6G0759' => 'sbo', 'Sc07g0009410' => 'sci', 'Sc14g0008730' => 'sci', 'Sc25g0004380' => 'sci', 'Sed0000044' => 'sed', 'Sed0003906' => 'sed', 'Sed0004671' => 'sed', 'Sed0015387' => 'sed', 'Sed0016469' => 'sed', 'Sed0021951' => 'sed', 'Sed0025685' => 'sed', 'Sed0027827' => 'sed', 'SEGI_16219' => 'sgi', 'SEGI_26142' => 'sgi', 'SEGI_28871' => 'sgi', 'SEGI_30452' => 'sgi', 'SEGI_30732' => 'sgi', 'SEGI_33913' => 'sgi', 'SEGI_35637' => 'sgi', 'SGA_v2.0_scaffold120G32823' => 'sas', 'SGA_v2.0_scaffold120G32827' => 'sas', 'SGA_v2.0_scaffold25G10804' => 'sas', 'SGA_v2.0_scaffold25G11046' => 'sas', 'SGA_v2.0_scaffold39G15254' => 'sas', 'SGA_v2.0_scaffold39G15260' => 'sas', 'SGA_v2.0_scaffold39G15262' => 'sas', 'SGA_v2.0_scaffold7G04159' => 'sas', 'SGA_v2.0_scaffold90G27854' => 'sas', 'SHI17220' => 'shi', 'SHI17221' => 'shi', 'SHI17222' => 'shi', 'SHI17225' => 'shi', 'SMO169G0294' => 'smo', 'SMO271G0169' => 'smo', 'Solyc03g005160.4' => 'sly', 'Solyc05g013440.3' => 'sly', 'Solyc06g071700.1' => 'sly', 'Solyc08g014330.3' => 'sly', 'Solyc08g079430.3' => 'sly', 'Solyc09g075930.2' => 'sly', 'Solyc09g075940.3' => 'sly', 'Solyc09g090490.3' => 'sly', 'Sopen03g001170' => 'spe', 'Sopen05g008250' => 'spe', 'Sopen06g028010' => 'spe', 'Sopen07g017370' => 'spe', 'Sopen08g005260' => 'spe', 'Sopen08g027800' => 'spe', 'Sopen09g030760' => 'spe', 'Sopen09g030770' => 'spe', 'Sopen09g033410' => 'spe', 'Sp1g27360' => 'spa', 'Sp2g01790' => 'spa', 'Sp4g24620' => 'spa', 'Sp6g05290' => 'spa', 'Sp6g05300' => 'spa', 'Sp7g13090' => 'spa', 'TAR365G0838' => 'tar', 'TAR371G0683' => 'tar', 'TAR374G1714' => 'tar', 'TAR375G1133' => 'tar', 'TAR622G0033' => 'tar', 'TAR629G0646' => 'tar', 'TAR629G2110' => 'tar', 'TAR629G3068' => 'tar', 'TAR629G3439' => 'tar', 'TAR636G1266' => 'tar', 'TAR636G1336' => 'tar', 'THA.LOC104803024' => 'tha', 'THA.LOC104808311' => 'tha', 'THA.LOC104808537' => 'tha', 'THA.LOC104809263' => 'tha', 'THA.LOC104813836' => 'tha', 'THA.LOC104814034' => 'tha', 'THA.LOC104818423' => 'tha', 'Thecc.02G258700' => 'tca', 'Thecc.03G020500' => 'tca', 'Thecc.03G260600' => 'tca', 'Thecc.03G261000' => 'tca', 'Thecc.03G261100' => 'tca', 'Thecc.04G229400' => 'tca', 'Thecc.04G229600' => 'tca', 'Thecc.04G229700' => 'tca', 'Thecc.04G230200' => 'tca', 'Thecc.04G230300' => 'tca', 'Thhalv10006982m.g' => 'esa', 'Thhalv10007005m.g' => 'esa', 'Thhalv10016316m.g' => 'esa', 'Thhalv10023306m.g' => 'esa', 'Thhalv10024636m.g' => 'esa', 'Thhalv10028460m.g' => 'esa', 'TPR.G14900' => 'tpr', 'TPR.G16166' => 'tpr', 'TPR.G18410' => 'tpr', 'TPR.G28338' => 'tpr', 'TPR.G29037' => 'tpr', 'TPR.G34662' => 'tpr', 'TPR.G38807' => 'tpr', 'TPR.G5484' => 'tpr', 'TPR.G5548' => 'tpr', 'TWI09G0611' => 'twi', 'TWI09G0966' => 'twi', 'TWI09G1231' => 'twi', 'TWI15G0068' => 'twi', 'TWI23G1238' => 'twi', 'TWI36G0537' => 'twi', 'TWI39G0539' => 'twi', 'TWI73G1085' => 'twi', 'TWI81G0314' => 'twi', 'unitig_0.g1426' => 'ugi', 'unitig_22.g5488' => 'ugi', 'unitig_26.g8944' => 'ugi', 'unitig_744.g24318' => 'ugi', 'unitig_744.g24319' => 'ugi', 'vmacro00228' => 'vma', 'vmacro16206' => 'vma', 'vmacro16639' => 'vma', 'vmacro21016' => 'vma', 'VMungo0251G0551' => 'vmu', 'VMungo0720G0330' => 'vmu', 'VMungo0720G0646' => 'vmu', 'VMungo0720G2275' => 'vmu', 'VMungo0720G2745' => 'vmu', 'VMungo1080G0445' => 'vmu', 'VMungo1080G1075' => 'vmu', 'VMungo1127G0347' => 'vmu', 'VMungo1215G0192' => 'vmu', 'VMungo1215G0533' => 'vmu', 'VMungo1309G3051' => 'vmu', 'Zm00001eb079760' => 'zma', 'Zm00001eb107350' => 'zma', 'Zm00001eb420190' => 'zma' ) $gf_id = 'HOM05D000637' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000637' ) $data_identifier = 'HOM05D000637' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 18, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 20, 'ath' => (int) 10, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 8, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 12, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 12, 'dca' => (int) 7, 'din' => (int) 15, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 10, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 11, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 11, 'vvi' => (int) 8, 'han' => (int) 12, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 18, 'sun' => (int) 3, 'lal' => (int) 8, 'lja' => (int) 8, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 8, 'nta' => (int) 15, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 13, 'ptr' => (int) 9, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 8, 'psa' => (int) 9, 'pso' => (int) 16, 'qlo' => (int) 17, 'rch' => (int) 13, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 9, 'shi' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 10, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 9, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 11, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420190' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1